# Lines with "#" at the begining are comments and they will not be parsed by the program.

# Note: the following keywords are case sensitive.

# xtandem database search result
xtandemXML=xtandem.xml

# The file can be generated by Trans-Proteomic Pipeline (TPP)
prophetFile=peptide_prophet.xml

# Save the xtandem search xml parsing result
tandemSaveName=xtandem_identified_list.txt

# EvaluationResult obtained from xtandem search result
evaXtandemSaveName=xtandemroc.txt

# Raw mzXML file
mzXMLFileName=mouse.mzXML

# define the decoy key word used in decoy database construction. This is just used for
# the performance evaluation purpose.
decoyKeyWord=decoy

# group size thresh
groupSize=3

# save evaluation result by group size
evaGroupSize=groupsizeroc.txt

# Typical values can be 0.8 ~ 0.99. The default value is 0.99 (please do not use 1).
# Generally, you do not have to change this parameter.
sigValue=0.99