Serialized Form


Package org.systemsbiology.jrap

Class org.systemsbiology.jrap.Scan extends java.lang.Object implements Serializable

Serialized Fields

header

ScanHeader header

floatMassIntensityList

float[][] floatMassIntensityList
A 2-dimensional array, element 0 contains a list of masses of peaks, element 1 contains a list of intensities of peaks.


doubleMassIntensityList

double[][] doubleMassIntensityList

Class org.systemsbiology.jrap.ScanHeader extends java.lang.Object implements Serializable

Serialized Fields

num

int num
Scan Number


msLevel

int msLevel
MS Scan Level


peaksCount

int peaksCount
Number of peaks in scan


polarity

java.lang.String polarity
TODO: Describe


scanType

java.lang.String scanType
TODO: Describe


centroided

int centroided
TODO: Describe


deisotoped

int deisotoped
TODO: Describe


chargeDeconvoluted

int chargeDeconvoluted
TODO: Describe


retentionTime

java.lang.String retentionTime
TODO: Describe


startMz

float startMz
TODO: Describe


endMz

float endMz
TODO: Describe


lowMz

float lowMz
TODO: Describe


highMz

float highMz
TODO: Describe


basePeakMz

float basePeakMz
TODO: Describe


basePeakIntensity

float basePeakIntensity
TODO: Describe


totIonCurrent

float totIonCurrent
TODO: Describe


precursorMz

float precursorMz
TODO: Describe


precursorScanNum

int precursorScanNum
TODO: Describe


precursorCharge

int precursorCharge
TODO: Describe


collisionEnergy

float collisionEnergy
TODO: Describe


ionisationEnergy

float ionisationEnergy
TODO: Describe


precision

int precision
TODO: Describe


byteOrder

java.lang.String byteOrder
Peaks attribute for mzXML_3.0


contentType

java.lang.String contentType

compressionType

java.lang.String compressionType

compressedLen

int compressedLen

Package org.systemsbiology.mzxmlviewer

Class org.systemsbiology.mzxmlviewer.MzXMLViewer extends javax.swing.JFrame implements Serializable

Serialized Fields

tableModel

MzTableModel tableModel

spectrum

SpectrumComponent spectrum

parser

MSXMLParser parser

scanHeaders

ScanHeader[] scanHeaders

lowerLayout

java.awt.CardLayout lowerLayout

selector

javax.swing.JComboBox selector

cardPanel

javax.swing.JPanel cardPanel

table

javax.swing.JTable table

openMenuItem

javax.swing.JMenuItem openMenuItem

showInfoMenuItem

javax.swing.JMenuItem showInfoMenuItem

exitMenuItem

javax.swing.JMenuItem exitMenuItem

aboutMenuItem

javax.swing.JMenuItem aboutMenuItem

mzXMLFile

java.io.File mzXMLFile

Package org.systemsbiology.mzxmlviewer.dialogs

Class org.systemsbiology.mzxmlviewer.dialogs.InfoDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

info

MZXMLFileInfo info

Package org.systemsbiology.mzxmlviewer.menus

Class org.systemsbiology.mzxmlviewer.menus.FileMenu extends javax.swing.JMenu implements Serializable

Class org.systemsbiology.mzxmlviewer.menus.HelpMenu extends javax.swing.JMenu implements Serializable

Class org.systemsbiology.mzxmlviewer.menus.RootMenuBar extends javax.swing.JMenuBar implements Serializable


Package org.systemsbiology.mzxmlviewer.tables

Class org.systemsbiology.mzxmlviewer.tables.MzTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

scanHeaders

ScanHeader[] scanHeaders

Package org.systemsbiology.mzxmlviewer.utilities

Class org.systemsbiology.mzxmlviewer.utilities.GenericFileChooser extends javax.swing.JFileChooser implements Serializable

Class org.systemsbiology.mzxmlviewer.utilities.LoadDataDialog extends javax.swing.JDialog implements Serializable

Class org.systemsbiology.mzxmlviewer.utilities.SpectrumComponent extends javax.swing.JPanel implements Serializable

Serialized Fields

chart

org.jfree.chart.JFreeChart chart

data

org.systemsbiology.mzxmlviewer.utilities.SpectrumComponent.MyDataSet data



SASHIMI Project